| Ident. | Authors (with country if any) | Title |
|---|
| 000532 (2019) |
Nicolas Denancé [France] ; Martial Briand [France] ; Romain Gaborieau [France] ; Sylvain Gaillard [France] ; Marie-Agnès Jacques [France] | Identification of genetic relationships and subspecies signatures in Xylella fastidiosa |
| 000A88 (2018) |
Magali Jaillard [France] ; Leandro Lima [France] ; Maud Tournoud [France] ; Pierre Mahé [France] ; Alex Van Belkum [France] ; Vincent Lacroix [France] ; Laurent Jacob [France] | A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events |
| 000A96 (2018) |
Erki Aun [Estonie] ; Age Brauer [Estonie] ; Veljo Kisand [Estonie] ; Tanel Tenson [Estonie] ; Maido Remm [Estonie] | A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria |
| 000B62 (2017) |
Jyoti K. Jha [États-Unis] ; Mi Li [États-Unis] ; Rodolfo Ghirlando [États-Unis] ; Lisa M. Miller Jenkins [États-Unis] ; Alexander Wlodawer [États-Unis] ; Dhruba Chattoraj [États-Unis] | The DnaK Chaperone Uses Different Mechanisms To Promote and Inhibit Replication of Vibrio cholerae Chromosome 2 |
| 000C69 (2017) |
Prinjaporn Teengam ; Weena Siangproh [Thaïlande] ; Adisorn Tuantranont [Thaïlande] ; Tirayut Vilaivan ; Orawon Chailapakul [Thaïlande] ; Charles S. Henry [États-Unis] | Multiplex Paper-Based Colorimetric DNA Sensor Using
Pyrrolidinyl Peptide Nucleic Acid-Induced AgNPs Aggregation for Detecting
MERS-CoV, MTB, and HPV Oligonucleotides |
| 000D21 (2017) |
Miho Hirai [Japon] ; Shinro Nishi [Japon] ; Miwako Tsuda [Japon] ; Michinari Sunamura [Japon] ; Yoshihiro Takaki [Japon] ; Takuro Nunoura [Japon] | Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments |
| 000D65 (2017) |
S T Ten [Malaisie] ; U. Hashim [Malaisie] ; S C B. Gopinath [Malaisie] ; W W Liu [Malaisie] ; K L Foo [Malaisie] ; S T Sam [Malaisie] ; S F A. Rahman [Malaisie] ; C H Voon [Malaisie] ; A N Nordin [Malaisie] | Highly sensitive Escherichia coli shear horizontal surface acoustic wave biosensor with silicon dioxide nanostructures. |
| 001026 (2016) |
John A. Lees [Royaume-Uni] ; Minna Vehkala [Finlande] ; Niko V Lim Ki [Finlande] ; Simon R. Harris [Royaume-Uni] ; Claire Chewapreecha [Royaume-Uni] ; Nicholas J. Croucher [Royaume-Uni] ; Pekka Marttinen [Finlande] ; Mark R. Davies [Australie] ; Andrew C. Steer [Australie] ; Steven Y. C. Tong [Australie] ; Antti Honkela [Finlande] ; Julian Parkhill [Royaume-Uni] ; Stephen D. Bentley [Royaume-Uni] ; Jukka Corander [Royaume-Uni, Finlande, Norvège] | Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes |
| 001565 (2015) |
Karen Köhler [Allemagne] ; Elke Duchardt-Ferner [Allemagne] ; Marcus Lechner [Allemagne] ; Katrin Damm [Allemagne] ; Philipp G. Hoch [Allemagne] ; Margarita Salas [Espagne] ; Roland K. Hartmann [Allemagne] | Structural and mechanistic characterization of 6S RNA from the hyperthermophilic bacterium Aquifex aeolicus. |
| 001595 (2015) |
Sooin Lee ; Yoseb Song ; Donghui Choe ; Suhyung Cho ; Seok Jong Yu ; Yongseong Cho ; Sun Chang Kim ; Byung-Kwan Cho | Reconstruction of Acetogenesis Pathway Using Short-Read Sequencing of Clostridium aceticum Genome. |
| 001913 (2015) |
David Koslicki [États-Unis] ; Saikat Chatterjee [Suède] ; Damon Shahrivar [Suède] ; Alan W. Walker [Royaume-Uni] ; Suzanna C. Francis [Royaume-Uni] ; Louise J. Fraser [Royaume-Uni] ; Mikko Vehkaper [Royaume-Uni] ; Yueheng Lan [République populaire de Chine] ; Jukka Corander [Finlande] | ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition |
| 001B32 (2014) |
Emanuel Weitschek [Italie] ; Daniele Santoni [Italie] ; Giulia Fiscon [Italie] ; Maria Cristina De Cola [Italie] ; Paola Bertolazzi [Italie] ; Giovanni Felici [Italie] | Next generation sequencing reads comparison with an alignment-free distance |
| 001D31 (2014) |
Mette V. Larsen [Danemark] ; Salvatore Cosentino ; Oksana Lukjancenko ; Dhany Saputra ; Simon Rasmussen ; Henrik Hasman ; Thomas Sicheritz-Pontén ; Frank M. Aarestrup ; David W. Ussery ; Ole Lund | Benchmarking of methods for genomic taxonomy. |
| 002212 (2012) |
Jyoti K. Jha ; Gaëlle Demarre ; Tatiana Venkova-Canova ; Dhruba K. Chattoraj | Replication regulation of Vibrio cholerae chromosome II involves initiator binding to the origin both as monomer and as dimer |
| 002282 (2012) |
Alberto Castellini [Italie] ; Giuditta Franco [Italie] ; Vincenzo Manca [Italie] | A dictionary based informational genome analysis |
| 002628 (2010) |
Yu Tzu Lin [Taïwan] ; Mario Vaneechoutte ; Ay Huey Huang ; Lee Jene Teng ; Hung-Mo Chen ; Shu-Li Su ; Tsung Chain Chang | Identification of clinically important anaerobic bacteria by an oligonucleotide array. |
| 002788 (2009) |
Hsun-Pi Su [Taïwan] ; Seng-Kai Tung ; Lei-Ron Tseng ; Wen-Cherng Tsai ; Tung-Ching Chung ; Tsung Chain Chang | Identification of legionella species by use of an oligonucleotide array. |
| 002A00 (2008) |
Audrey J. King [Pays-Bas] ; Tamara Van Gorkom [Pays-Bas] ; Jeroen La Pennings [Pays-Bas] ; Han Gj Van Der Heide [Pays-Bas] ; Qiushui He [Finlande] ; Dimitri Diavatopoulos [Australie] ; Kees Heuvelman [Pays-Bas] ; Marjolein Van Gent [Pays-Bas] ; Karin Van Leeuwen [Pays-Bas] ; Frits R. Mooi [Pays-Bas] | Comparative genomic profiling of Dutch clinical Bordetella pertussis isolates using DNA microarrays: Identification of genes absent from epidemic strains |
| 002A11 (2008) |
S. Contini [Italie] ; M. Pallante ; S. Vejbaesya ; M H Park ; N. Chierakul ; H S Kim ; C. Saltini ; M. Amicosante | A model of phenotypic susceptibility to tuberculosis: deficient in silico selection of Mycobacterium tuberculosis epitopes by HLA alleles. |
| 002B24 (2007) |
Iris Brune [Allemagne] ; Nina Jochmann ; Karina Brinkrolf ; Andrea T. Hüser ; Robert Gerstmeir ; Bernhard J. Eikmanns ; Jörn Kalinowski ; Alfred Pühler ; Andreas Tauch | The IclR-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum. |
| 002D14 (2006) |
Georgios S. Vernikos [Royaume-Uni] ; Julian Parkhill | Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. |
| 002D34 (2006) |
Raghavan U M. Palaniappan [États-Unis] ; Yu Zhang ; David Chiu ; Alfonso Torres ; Chobi Debroy ; Thomas S. Whittam ; Yung-Fu Chang | Differentiation of Escherichia coli pathotypes by oligonucleotide spotted array. |
| 002D38 (2006) |
Sebastian Günther [Allemagne] ; Ingrid Groth ; Susanne Grabley ; Thomas Munder | Design and evaluation of an oligonucleotide-microarray for the detection of different species of the genus Kitasatospora. |
| 002D49 (2006) |
Sheng Kai Tung [Belgique] ; Lee Jene Teng ; Mario Vaneechoutte ; Hung Mo Chen ; Tsung Chain Chang | Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus. |
| 002E90 (2005) |
Lukasz Kowalczyk [Pologne] ; Magdalena Rajewska ; Igor Konieczny | Positioning and the specific sequence of each 13-mer motif are critical for activity of the plasmid RK2 replication origin. |
| 002F20 (2005) |
Daniel Coman [États-Unis] ; Irina M. Russu | Base pair opening in three DNA-unwinding elements. |
| 003037 (2004) |
Harjeet Kaur [États-Unis] ; Liliana Jaso-Friedmann ; Donald L. Evans | Single base oligodeoxyguanosine upregulates Fas ligand release by nonspecific cytotoxic cells. |
| 003069 (2004) |
Jaroslaw Letowski [Canada] ; Roland Brousseau ; Luke Masson | Designing better probes: effect of probe size, mismatch position and number on hybridization in DNA oligonucleotide microarrays. |
| 003200 (2003) |
Makoto Tsuruoka [Japon] ; Isao Karube | Rapid hybridization at high salt concentration and detection of bacterial DNA using fluorescence polarization. |
| 003347 (2002) |
M. Oumouna [États-Unis] ; L. Jaso-Friedmann ; D L Evans | Activation of nonspecific cytotoxic cells (NCC) with synthetic oligodeoxynucleotides and bacterial genomic DNA: binding, specificity and identification of unique immunostimulatory motifs. |
| 003424 (2001) |
M. Malak [Belgique] ; A. Vivier ; P. André ; J. Decallonne ; P. Gilot | RAPD analysis, serotyping, and esterase typing indicate that the population of Listeria monocytogenes strains recovered from cheese and from patients with listeriosis in Belgium are different. |
| 003701 (2000) |
Ki Hyun Ryu [Corée du Sud] ; Sun Hee Choi ; Jong Suk Lee | Restriction primers as short as 6-mers for PCR amplification of bacterial and plant genomic DNA and plant viral RNA |
| 003794 (1999) |
J. Lherminier [France] ; R G Bonfiglioli ; X. Daire ; R H Symons ; E. Boudon-Padieu | Oligodeoxynucleotides as probes for in situ hybridization with transmission electron microscopy to specifically localize phytoplasma in plant cells. |
| 003799 (1999) |
Christine Lawrence ; Esthel Ronco ; Sylvie Dubrou ; Roland Leclercq [France] ; Charles Nauciel ; Peggy Matsiota-Bernard | Molecular typing of Legionella pneumophila serogroup 1 isolates from patients and the nosocomial environment by arbitrarily primed PCR and pulsed-field gel electrophoresis. |
| 003803 (1999) |
S. Kang [Corée du Sud] ; H. Lee ; J S Han ; D S Hwang | Interaction of SeqA and Dam methylase on the hemimethylated origin of Escherichia coli chromosomal DNA replication. |
| 003984 (1998) |
K S Doran [États-Unis] ; I. Konieczny ; D R Helinski | Replication origin of the broad host range plasmid RK2. Positioning of various motifs is critical for initiation of replication. |
| 003C02 (1997) |
M. Tsuruoka ; T. Honda ; I. Karube | [Rapid detection of the Escherichia cori verotoxin gene using fluorescence polarization]. |
| 003C05 (1997) |
R J Phillips [Royaume-Uni] ; D C Hickleton ; P E Boehmer ; P T Emmerson | The RecB protein of Escherichia coli translocates along single-stranded DNA in the 3' to 5' direction: a proposed ratchet mechanism. |
| 003E28 (1996) |
A. Garcia [Chili] ; R. Montoya ; H. Bello ; G. Gonzalez ; M. Dominguez ; R. Zemelman | Differentiation of Acinetobacter baumannii biotypes by amplification of 16S-23S rRNA intergenic spacer sequences. |
| 003E61 (1996) |
Makoto Tsuruoka [Japon] ; Kazuyoshi Yano [Japon] ; Kazunori Ikebukuro [Japon] ; Hidetoshi Nakayama [Japon] ; Yuzo Masuda [Japon] ; Isao Karube [Japon] | Optimization of the rate of DNA hybridization and rapid detection of methicillin resistant Staphylococcus aureus DNA using fluorescence polarization |
| 004050 (1995) |
S. O'Handley ; C P Scholes ; R P Cunningham | Endonuclease III interactions with DNA substrates. 1. Binding and footprinting studies with oligonucleotides containing a reduced apyrimidinic site. |
| 004269 (1994) |
J. Hsu [États-Unis] ; D. Bramhill ; C M Thompson | Open complex formation by DnaA initiation protein at the Escherichia coli chromosomal origin requires the 13-mers precisely spaced relative to the 9-mers. |
| 004291 (1994) |
L B Augustin ; B A Jacobson ; J A Fuchs | Escherichia coli Fis and DnaA proteins bind specifically to the nrd promoter region and affect expression of an nrd-lac fusion. |
| 004296 (1994) |
M. Suhan ; S Y Chen ; H A Thompson ; T A Hoover ; A. Hill ; J C Williams | Cloning and characterization of an autonomous replication sequence from Coxiella burnetii. |
| 004507 (1993) |
E. Crooke [États-Unis] ; R. Thresher ; D S Hwang ; J. Griffith ; A. Kornberg | Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope. |
| 004718 (1992) |
S. Mazurier [Pays-Bas] ; A. Van De Giessen ; K. Heuvelman ; K. Wernars | RAPD analysis of Campylobacter isolates: DNA fingerprinting without the need to purify DNA. |
| 004719 (1992) |
D S Hwang [États-Unis] ; A. Kornberg | Opposed actions of regulatory proteins, DnaA and IciA, in opening the replication origin of Escherichia coli. |
| 004720 (1992) |
D S Hwang [États-Unis] ; A. Kornberg | Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF. |
| 004727 (1992) |
D S Hwang [États-Unis] ; B. Thöny ; A. Kornberg | IciA protein, a specific inhibitor of initiation of Escherichia coli chromosomal replication. |
| 004861 (1991) |
C K Foley [États-Unis] ; L G Pedersen ; T A Darden ; B W Glickman ; M W Anderson | Theoretical and experimental measures of DNA helix stability and their relation to sequence specific repair of O6-ethylguanine lesions. |
| 004A03 (1990) |
T A Cebula [États-Unis] ; W H Koch | Analysis of spontaneous and psoralen-induced Salmonella typhimurium hisG46 revertants by oligodeoxyribonucleotide colony hybridization: use of psoralens to cross-link probes to target sequences. |
